Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
ybhSInner membrane transport permease YbhS. (356 aa)    
Predicted Functional Partners:
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
  
 0.997
aaeA_2
P-hydroxybenzoic acid efflux pump subunit AaeA.
 
  
 0.967
yxlF
Putative ABC transporter ATP-binding protein YxlF.
  
 0.960
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
 
  
 0.944
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
   
  0.813
mdtN
Multidrug resistance protein MdtN.
 
  
 0.780
potA_5
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
 
 0.750
glnQ_1
Glutamine transport ATP-binding protein GlnQ.
 
      0.727
SBO11540.1
ABC-2 family transporter protein.
  
     0.704
potA_4
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
   
  0.699
Your Current Organism:
Vibrio mediterranei
NCBI taxonomy Id: 689
Other names: ATCC 43341, ATCC BAA-91 [[Vibrio shilonii]], ATCC:BAA:91 [[Vibrio shilonii]], CAIM 316, CCUG 19040, CECT 621, CIP 103203, CIP 107136 [[Vibrio shilonii]], DSM 13774 [[Vibrio shilonii]], DSM 19502, IFO 15635, LMG 11258, LMG 19703 [[Vibrio shilonii]], LMG:11258, LMG:19703 [[Vibrio shilonii]], NBRC 15635, NCTC 11946, V. mediterranei, Vibrio mediterraneus, Vibrio shiloi, Vibrio shiloi (sic) Kushmaro et al. 2001, Vibrio shilonii, Vibrio shilonii corrig. Kushmaro et al. 2001, strain 50, strain AK1 [[Vibrio shilonii]]
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