Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rpfG_8Cyclic di-GMP phosphodiesterase response regulator RpfG. (345 aa)    
Predicted Functional Partners:
barA_6
Signal transduction histidine-protein kinase BarA.
 
 
 0.953
dosC_2
Diguanylate cyclase DosC.
 
 0.932
barA_5
Signal transduction histidine-protein kinase BarA.
 
 0.905
dosC_1
Diguanylate cyclase DosC.
 
 0.891
adrA_3
Putative diguanylate cyclase AdrA.
 
    0.890
barA_1
Signal transduction histidine-protein kinase BarA.
 
0.882
barA_4
Signal transduction histidine-protein kinase BarA.
 
 
0.796
luxQ_5
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.786
luxQ_4
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.753
ycdT_2
Putative diguanylate cyclase YcdT.
 
    0.747
Your Current Organism:
Vibrio mediterranei
NCBI taxonomy Id: 689
Other names: ATCC 43341, ATCC BAA-91 [[Vibrio shilonii]], ATCC:BAA:91 [[Vibrio shilonii]], CAIM 316, CCUG 19040, CECT 621, CIP 103203, CIP 107136 [[Vibrio shilonii]], DSM 13774 [[Vibrio shilonii]], DSM 19502, IFO 15635, LMG 11258, LMG 19703 [[Vibrio shilonii]], LMG:11258, LMG:19703 [[Vibrio shilonii]], NBRC 15635, NCTC 11946, V. mediterranei, Vibrio mediterraneus, Vibrio shiloi, Vibrio shiloi (sic) Kushmaro et al. 2001, Vibrio shilonii, Vibrio shilonii corrig. Kushmaro et al. 2001, strain 50, strain AK1 [[Vibrio shilonii]]
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