Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dctB_3C4-dicarboxylate transport sensor protein DctB. (424 aa)    
Predicted Functional Partners:
hupR1_1
Hydrogenase transcriptional regulatory protein hupR1.
 
 
 
 0.960
barA_4
Signal transduction histidine-protein kinase BarA.
 
 
 0.860
sdcS_3
Sodium-dependent dicarboxylate transporter SdcS.
 
     0.813
hupR1_2
Hydrogenase transcriptional regulatory protein hupR1.
 
   
 0.708
evgS
Sensor protein EvgS precursor.
 
 
 
 0.669
torS_2
Sensor protein TorS.
 
 
 0.655
arcB
Aerobic respiration control sensor protein ArcB.
 
 
 0.644
flgD_1
Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
   
    0.640
flgD_2
Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
   
    0.640
pspE_2
Thiosulfate sulfurtransferase PspE precursor.
       0.640
Your Current Organism:
Vibrio mediterranei
NCBI taxonomy Id: 689
Other names: ATCC 43341, ATCC BAA-91 [[Vibrio shilonii]], ATCC:BAA:91 [[Vibrio shilonii]], CAIM 316, CCUG 19040, CECT 621, CIP 103203, CIP 107136 [[Vibrio shilonii]], DSM 13774 [[Vibrio shilonii]], DSM 19502, IFO 15635, LMG 11258, LMG 19703 [[Vibrio shilonii]], LMG:11258, LMG:19703 [[Vibrio shilonii]], NBRC 15635, NCTC 11946, V. mediterranei, Vibrio mediterraneus, Vibrio shiloi, Vibrio shiloi (sic) Kushmaro et al. 2001, Vibrio shilonii, Vibrio shilonii corrig. Kushmaro et al. 2001, strain 50, strain AK1 [[Vibrio shilonii]]
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