Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cydDATP-binding/permease protein CydD. (595 aa)    
Predicted Functional Partners:
SBO11890.1
Putative ABC transporter ATP-binding protein.
 
0.999
cydB_2
Cytochrome bd-I ubiquinol oxidase subunit 2.
 
  
 0.961
cydB_1
Cytochrome bd-I ubiquinol oxidase subunit 2.
 
  
 0.960
cydA_1
Cytochrome bd-I ubiquinol oxidase subunit 1.
 
  
 0.942
cydA_2
Cytochrome bd-I ubiquinol oxidase subunit 1.
 
  
 0.942
pstB3_2
Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.668
trxB
Thioredoxin reductase.
     
 0.576
cydX_2
Cytochrome bd-I ubiquinol oxidase subunit X.
 
  
 0.510
metN
Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
0.507
uspA_1
Universal stress protein A.
  
     0.456
Your Current Organism:
Vibrio mediterranei
NCBI taxonomy Id: 689
Other names: ATCC 43341, ATCC BAA-91 [[Vibrio shilonii]], ATCC:BAA:91 [[Vibrio shilonii]], CAIM 316, CCUG 19040, CECT 621, CIP 103203, CIP 107136 [[Vibrio shilonii]], DSM 13774 [[Vibrio shilonii]], DSM 19502, IFO 15635, LMG 11258, LMG 19703 [[Vibrio shilonii]], LMG:11258, LMG:19703 [[Vibrio shilonii]], NBRC 15635, NCTC 11946, V. mediterranei, Vibrio mediterraneus, Vibrio shiloi, Vibrio shiloi (sic) Kushmaro et al. 2001, Vibrio shilonii, Vibrio shilonii corrig. Kushmaro et al. 2001, strain 50, strain AK1 [[Vibrio shilonii]]
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