Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gltB_1Ferredoxin-dependent glutamate synthase 1. (1515 aa)    
Predicted Functional Partners:
gltD_1
Glutamate synthase [NADPH] small chain.
 
 
 0.999
fadH
2,4-dienoyl-CoA reductase [NADPH].
  
 
 0.999
gltD_2
Glutamate synthase [NADPH] small chain.
 
 0.999
fdhF_1
Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.999
gltB_2
Glutamate synthase [NADPH] small chain.
 0.999
gltB_3
Glutamate synthase [NADPH] large chain precursor.
 
0.999
gltD_3
Glutamate synthase [NADPH] small chain.
 0.999
carB
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
  
 
 0.979
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 0.973
puuA_1
Gamma-glutamylputrescine synthetase PuuA; Belongs to the glutamine synthetase family.
  
 
 0.952
Your Current Organism:
Vibrio mediterranei
NCBI taxonomy Id: 689
Other names: ATCC 43341, ATCC BAA-91 [[Vibrio shilonii]], ATCC:BAA:91 [[Vibrio shilonii]], CAIM 316, CCUG 19040, CECT 621, CIP 103203, CIP 107136 [[Vibrio shilonii]], DSM 13774 [[Vibrio shilonii]], DSM 19502, IFO 15635, LMG 11258, LMG 19703 [[Vibrio shilonii]], LMG:11258, LMG:19703 [[Vibrio shilonii]], NBRC 15635, NCTC 11946, V. mediterranei, Vibrio mediterraneus, Vibrio shiloi, Vibrio shiloi (sic) Kushmaro et al. 2001, Vibrio shilonii, Vibrio shilonii corrig. Kushmaro et al. 2001, strain 50, strain AK1 [[Vibrio shilonii]]
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