STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaM_3Putative diguanylate cyclase YdaM. (282 aa)    
Predicted Functional Partners:
cph2_5
Phytochrome-like protein cph2.
 
 
 0.837
cph2_8
Phytochrome-like protein cph2.
   0.821
cph2_1
Phytochrome-like protein cph2.
 
   0.814
cph2_2
Phytochrome-like protein cph2.
  
    0.803
adrB
Putative cyclic-di-GMP phosphodiesterase AdrB.
  
  
 0.803
yjcC
Putative membrane protein YjcC.
  
    0.801
csrD
RNase E specificity factor CsrD.
  
  
 0.801
dosC_4
Diguanylate cyclase DosC.
 
   
 0.781
yegE
Putative diguanylate cyclase YegE.
  
    0.775
ycdT_1
Putative diguanylate cyclase YcdT.
  
     0.774
Your Current Organism:
Vibrio mediterranei
NCBI taxonomy Id: 689
Other names: ATCC 43341, ATCC BAA-91 [[Vibrio shilonii]], ATCC:BAA:91 [[Vibrio shilonii]], CAIM 316, CCUG 19040, CECT 621, CIP 103203, CIP 107136 [[Vibrio shilonii]], DSM 13774 [[Vibrio shilonii]], DSM 19502, IFO 15635, LMG 11258, LMG 19703 [[Vibrio shilonii]], LMG:11258, LMG:19703 [[Vibrio shilonii]], NBRC 15635, NCTC 11946, V. mediterranei, Vibrio mediterraneus, Vibrio shiloi, Vibrio shiloi (sic) Kushmaro et al. 2001, Vibrio shilonii, Vibrio shilonii corrig. Kushmaro et al. 2001, strain 50, strain AK1 [[Vibrio shilonii]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.