Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SBO10351.1 | ydcR_2 | VME0621_02465 | VME0621_04433 | Putative GTP cyclohydrolase 1 type 2. | Putative HTH-type transcriptional regulator YdcR. | 0.589 |
SBO12284.1 | SBO12285.1 | VME0621_04431 | VME0621_04432 | Hypothetical protein; Belongs to the UPF0270 family. | Putative hydrolase. | 0.697 |
SBO12284.1 | cfxP | VME0621_04431 | VME0621_04430 | Hypothetical protein; Belongs to the UPF0270 family. | Phosphoribulokinase, plasmid. | 0.564 |
SBO12284.1 | eamB_2 | VME0621_04431 | VME0621_04434 | Hypothetical protein; Belongs to the UPF0270 family. | Cysteine/O-acetylserine efflux protein. | 0.466 |
SBO12284.1 | ydcR_2 | VME0621_04431 | VME0621_04433 | Hypothetical protein; Belongs to the UPF0270 family. | Putative HTH-type transcriptional regulator YdcR. | 0.655 |
SBO12285.1 | SBO12284.1 | VME0621_04432 | VME0621_04431 | Putative hydrolase. | Hypothetical protein; Belongs to the UPF0270 family. | 0.697 |
SBO12285.1 | cfxP | VME0621_04432 | VME0621_04430 | Putative hydrolase. | Phosphoribulokinase, plasmid. | 0.515 |
SBO12285.1 | eamB_2 | VME0621_04432 | VME0621_04434 | Putative hydrolase. | Cysteine/O-acetylserine efflux protein. | 0.556 |
SBO12285.1 | ydcR_2 | VME0621_04432 | VME0621_04433 | Putative hydrolase. | Putative HTH-type transcriptional regulator YdcR. | 0.795 |
cfxP | SBO12284.1 | VME0621_04430 | VME0621_04431 | Phosphoribulokinase, plasmid. | Hypothetical protein; Belongs to the UPF0270 family. | 0.564 |
cfxP | SBO12285.1 | VME0621_04430 | VME0621_04432 | Phosphoribulokinase, plasmid. | Putative hydrolase. | 0.515 |
cfxP | ydcR_2 | VME0621_04430 | VME0621_04433 | Phosphoribulokinase, plasmid. | Putative HTH-type transcriptional regulator YdcR. | 0.516 |
eamB_2 | SBO12284.1 | VME0621_04434 | VME0621_04431 | Cysteine/O-acetylserine efflux protein. | Hypothetical protein; Belongs to the UPF0270 family. | 0.466 |
eamB_2 | SBO12285.1 | VME0621_04434 | VME0621_04432 | Cysteine/O-acetylserine efflux protein. | Putative hydrolase. | 0.556 |
eamB_2 | ydcR_2 | VME0621_04434 | VME0621_04433 | Cysteine/O-acetylserine efflux protein. | Putative HTH-type transcriptional regulator YdcR. | 0.650 |
hydA | ydcR_2 | VME0621_01461 | VME0621_04433 | Periplasmic [Fe] hydrogenase large subunit. | Putative HTH-type transcriptional regulator YdcR. | 0.606 |
ndhI | ydcR_2 | VME0621_03769 | VME0621_04433 | NAD(P)H-quinone oxidoreductase subunit I, chloroplastic. | Putative HTH-type transcriptional regulator YdcR. | 0.542 |
pdxY | ydcR_2 | VME0621_03304 | VME0621_04433 | Pyridoxamine kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP. | Putative HTH-type transcriptional regulator YdcR. | 0.725 |
ydcR_2 | SBO10351.1 | VME0621_04433 | VME0621_02465 | Putative HTH-type transcriptional regulator YdcR. | Putative GTP cyclohydrolase 1 type 2. | 0.589 |
ydcR_2 | SBO12284.1 | VME0621_04433 | VME0621_04431 | Putative HTH-type transcriptional regulator YdcR. | Hypothetical protein; Belongs to the UPF0270 family. | 0.655 |
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