STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0012Diguanylate cyclase. (578 aa)    
Predicted Functional Partners:
GLE_5164
Response regulator protein.
 
  
  0.937
GLE_5222
Diguanylate cyclase.
 
      0.884
GLE_0632
Sensory box histidine kinase.
 
 
0.862
GLE_1751
Diguanylate cyclase.
  
0.856
GLE_5368
Sensor histidine kinase.
  
0.818
pilH-2
Type IV pilus assembly protein.
  
  
  0.777
GLE_1143
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
0.767
GLE_1142
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
0.766
pilH
Type IV pilus assembly protein.
  
  
  0.757
GLE_4889
DNA-binding response regulator.
  
  
  0.751
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.