Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0034Hypothetical protein. (271 aa)    
Predicted Functional Partners:
GLE_0037
Hypothetical protein.
   
   0.862
GLE_0033
Hypothetical protein.
       0.792
GLE_0029
Tail length tape measure protein.
 
     0.791
GLE_0036
Hypothetical protein.
       0.776
GLE_0035
Hypothetical protein.
       0.767
GLE_5523
Hypothetical protein.
 
     0.765
GLE_5524
Phage terminase large subunit (GpA).
 
     0.761
GLE_5517
Hypothetical protein.
 
     0.742
GLE_0027
Hypothetical protein.
 
     0.740
GLE_5508
Hypothetical protein.
  
     0.740
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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