STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0058Short chain fatty acid transporter, putative. (479 aa)    
Predicted Functional Partners:
GLE_0059
Hypothetical protein.
       0.773
scoB
succinyl-CoA:3-ketoacid-coenzyme A transferase, subunit B.
 
  
 0.605
cstA
Carbon starvation family protein.
  
     0.568
GLE_3633
Hypothetical protein.
  
     0.560
GLE_2866
Citrate transporter.
 
   
 0.489
GLE_4833
Hypothetical protein.
  
     0.472
GLE_4228
3-oxoacid CoA-transferase, A subunit family.
 
  
 0.452
GLE_0057
Endoribonuclease L-PSP family protein.
       0.420
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.