STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0102Type I pili usher pathway. (252 aa)    
Predicted Functional Partners:
fasD
Outer membrane usher protein.
 
 0.993
GLE_0100
Spore coat U domain protein.
 
 
 0.986
GLE_0103
Protein U domain protein.
 
 
 0.982
GLE_5457
Fimbrial protein.
  
 
 0.967
GLE_5456
Outer membrane usher protein.
 
 
 0.954
GLE_5459
Fimbrial protein.
 
 
 0.931
GLE_0483
Fimbrial protein.
 
 
 0.599
GLE_4433
Fimbrial protein.
 
 
 0.588
GLE_4162
Aspartyl/asparaginyl beta-hydroxylase family.
  
     0.559
GLE_0099
Hypothetical protein.
       0.498
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.