STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0103Protein U domain protein. (155 aa)    
Predicted Functional Partners:
GLE_0102
Type I pili usher pathway.
 
 0.998
fasD
Outer membrane usher protein.
 
 
 0.994
GLE_0100
Spore coat U domain protein.
 
  
 
0.975
GLE_5456
Outer membrane usher protein.
 
  
 0.881
GLE_5455
Gram-negative pili assembly chaperone, N-terminal domain.
 
 
 0.787
GLE_4162
Aspartyl/asparaginyl beta-hydroxylase family.
  
     0.543
GLE_5260
Hypothetical protein.
   
 0.541
GLE_0099
Hypothetical protein.
       0.495
GLE_3190
Hydrolase, alpha/beta fold family.
  
     0.476
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.