Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0155Hypothetical protein. (447 aa)    
Predicted Functional Partners:
vacJ
Lipoprotein VacJ precursor.
    
 
 0.806
GLE_3084
TonB-dependent receptor.
  
     0.603
GLE_3159
TonB-dependent receptor.
  
 
 
 0.579
GLE_0164
Sensory box histidine kinase.
 
 
 0.572
GLE_0156
Hypothetical protein.
       0.565
GLE_0159
Transcriptional regulator, LuxR family.
 
    0.542
GLE_1426
TonB-dependent receptor.
  
 
 
 0.521
GLE_2864
Sensory box histidine kinase.
 
     0.514
GLE_1299
TonB-dependent receptor.
  
     0.503
GLE_4423
TonB-dependent receptor domain protein.
  
     0.477
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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