Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0166PKD repeat family protein. (412 aa)    
Predicted Functional Partners:
phoA
Alkaline phosphatase precursor.
  
     0.715
GLE_3839
Zinc carboxypeptidase/PKD domain/proprotein convertase P-domain protein.
  
     0.661
GLE_3479
Peptidase, families S8 and S53.
  
  
  0.606
GLE_4066
Hypothetical protein.
  
     0.549
GLE_3845
PKD domain/proprotein convertase P-domain protein.
  
  
  0.546
GLE_3854
Peptidase, families S8 and S53/PKD domain/proprotein convertase P-domain protein; Belongs to the peptidase S8 family.
  
  
  0.533
GLE_0833
Beta-lytic metalloendopeptidase; Belongs to the peptidase M23A family.
  
     0.511
GLE_3852
Peptidase, families S8 and S53/proprotein convertase P-domain protein; Belongs to the peptidase S8 family.
  
  
  0.511
GLE_3837
Peptidase, M28 family/proprotein convertase P-domain protein.
  
    0.493
GLE_5020
Pyridoxal-phosphate dependent enzyme.
  
     0.478
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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