Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0190Hypothetical protein. (636 aa)    
Predicted Functional Partners:
GLE_0191
Hypothetical protein.
 
     0.945
GLE_5068
alpha-L-fucosidase.
  
     0.713
GLE_0193
Beta-lactamase.
 
     0.678
GLE_5067
F5/8 type C domain protein.
  
     0.649
GLE_2273
Glycosyl hydrolase, family 2.
 
     0.643
GLE_4987
Phosphate-selective porin O and P.
  
     0.633
GLE_5000
Hypothetical protein.
  
     0.615
GLE_2297
Hypothetical protein.
  
     0.599
GLE_0189
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
     0.591
GLE_2608
AP endonuclease, family 2.
  
     0.575
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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