STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0194TonB-dependent receptor. (762 aa)    
Predicted Functional Partners:
GLE_0919
TonB-dependent receptor.
  
     0.621
GLE_0191
Hypothetical protein.
 
     0.602
GLE_5000
Hypothetical protein.
  
     0.572
GLE_0195
Hypothetical protein.
       0.550
GLE_0190
Hypothetical protein.
 
     0.545
GLE_3191
Hypothetical protein.
  
     0.486
GLE_5058
Sigma factor regulatory protein, FecR/PupR family.
  
    0.479
GLE_2532
TonB-dependent receptor.
  
     0.444
GLE_0193
Beta-lactamase.
       0.436
GLE_2547
Sigma factor regulatory protein, FecR/PupR family.
  
    0.423
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.