STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speABiosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (629 aa)    
Predicted Functional Partners:
rocF
Arginase; Belongs to the arginase family.
  
 
 0.905
rocF-2
Arginase; Belongs to the arginase family.
  
 
 0.905
GLE_4754
Agmatine deiminase; Belongs to the agmatine deiminase family.
 
  
 0.902
argH
Argininosuccinate lyase.
     
 0.880
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
    
 0.875
aguA
Agmatine deiminase; Belongs to the agmatine deiminase family.
 
  
 0.812
GLE_0245
Hypothetical protein.
       0.762
GLE_2931
Beta-alanine synthetase.
 
  
 0.645
GLE_4609
Pyridine nucleotide-disulfide oxidoreductase.
     
  0.591
GLE_0246
Oxidoreductase.
       0.587
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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