Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0291Hypothetical protein. (75 aa)    
Predicted Functional Partners:
GLE_0293
Hypothetical protein.
 
     0.805
GLE_0292
Hypothetical protein.
 
     0.731
GLE_0294
Cytochrome oxidase assembly protein.
 
    0.711
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.579
GLE_5037
hemY-like protein.
  
     0.570
GLE_3061
Surface antigen family protein.
  
     0.522
GLE_2701
Nucleoprotein/polynucleotide-associated enzyme.
  
     0.516
GLE_2875
Hypothetical protein.
  
     0.473
hns
DNA-binding protein H-NS.
  
     0.418
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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