chiA2 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiA2

Chitinase; Belongs to the glycosyl hydrolase 18 family. (594 aa)

Predicted Functional Partners:

GLE_4851

0.936

GLE_5161

0.915

GLE_2271

0.912

chiA1

0.883

nagZ

0.873

GLE_2053

0.820

GLE_4852

0.800

bgc

0.782

GLE_3278

0.725

GLE_0494

0.645

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_0494	GLE_2053	GLE_0494	GLE_2053	Ricin type lectin domain protein.	Endochitinase GH fam 19.	0.761
GLE_0494	GLE_3278	GLE_0494	GLE_3278	Ricin type lectin domain protein.	Hydrolase.	0.723
GLE_0494	GLE_4851	GLE_0494	GLE_4851	Ricin type lectin domain protein.	Chitin binding domain.	0.637
GLE_0494	GLE_4852	GLE_0494	GLE_4852	Ricin type lectin domain protein.	Chitin binding domain.	0.643
GLE_0494	chiA1	GLE_0494	GLE_1126	Ricin type lectin domain protein.	Chitinase A.	0.693
GLE_0494	chiA2	GLE_0494	GLE_0401	Ricin type lectin domain protein.	Chitinase; Belongs to the glycosyl hydrolase 18 family.	0.645
GLE_2053	GLE_0494	GLE_2053	GLE_0494	Endochitinase GH fam 19.	Ricin type lectin domain protein.	0.761
GLE_2053	GLE_3278	GLE_2053	GLE_3278	Endochitinase GH fam 19.	Hydrolase.	0.779
GLE_2053	GLE_4851	GLE_2053	GLE_4851	Endochitinase GH fam 19.	Chitin binding domain.	0.705
GLE_2053	GLE_4852	GLE_2053	GLE_4852	Endochitinase GH fam 19.	Chitin binding domain.	0.707
GLE_2053	chiA1	GLE_2053	GLE_1126	Endochitinase GH fam 19.	Chitinase A.	0.799
GLE_2053	chiA2	GLE_2053	GLE_0401	Endochitinase GH fam 19.	Chitinase; Belongs to the glycosyl hydrolase 18 family.	0.820
GLE_2271	GLE_4851	GLE_2271	GLE_4851	Beta-hexosaminidase.	Chitin binding domain.	0.507
GLE_2271	GLE_5161	GLE_2271	GLE_5161	Beta-hexosaminidase.	Beta-hexosaminidase.	0.893
GLE_2271	bgc	GLE_2271	GLE_4374	Beta-hexosaminidase.	Beta-glucanase; Belongs to the glycosyl hydrolase 8 (cellulase D) family.	0.407
GLE_2271	chiA1	GLE_2271	GLE_1126	Beta-hexosaminidase.	Chitinase A.	0.919
GLE_2271	chiA2	GLE_2271	GLE_0401	Beta-hexosaminidase.	Chitinase; Belongs to the glycosyl hydrolase 18 family.	0.912
GLE_2271	nagZ	GLE_2271	GLE_1718	Beta-hexosaminidase.	Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.	0.889
GLE_3278	GLE_0494	GLE_3278	GLE_0494	Hydrolase.	Ricin type lectin domain protein.	0.723
GLE_3278	GLE_2053	GLE_3278	GLE_2053	Hydrolase.	Endochitinase GH fam 19.	0.779