Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
plyL-alanyl-D-glutamate peptidase. (297 aa)    
Predicted Functional Partners:
icmF
Type VI secretion protein IcmF.
 
     0.841
GLE_0443
Type IV / VI secretion system protein, DotU family.
 
     0.807
GLE_0433
OmpA/MotB family protein.
 
     0.793
tssK
Type VI secretion protein, VC_A0114 family.
 
     0.787
GLE_0449
Hypothetical protein.
 
     0.783
tssA
Type VI secretion-associated protein, ImpA family.
 
     0.780
tssJ
Type VI secretion lipoprotein, VC_A0113 family.
  
   
 0.776
tssE
Type VI secretion system lysozyme-related protein.
 
     0.773
GLE_0320
PAAR motif family protein.
  
     0.772
GLE_0436
Type VI secretion system Vgr family protein.
  
     0.770
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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