STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icmFType VI secretion protein IcmF. (1267 aa)    
Predicted Functional Partners:
GLE_0433
OmpA/MotB family protein.
  
  0.979
GLE_0432
Type VI secretion-associated protein, BMA_A0400 family.
 
  
 0.941
tssC
Type VI secretion protein, EvpB/VC_A0108 family.
 
 
 0.885
GLE_0443
Type IV / VI secretion system protein, DotU family.
 
 
 0.867
tssB
Type VI secretion protein, VC_A0107 family.
 
 
 0.866
tssK
Type VI secretion protein, VC_A0114 family.
 
 
 0.865
tssG
Type VI secretion protein, VC_A0111 family.
 
 
 0.852
GLE_0449
Hypothetical protein.
 
 
 0.842
ply
L-alanyl-D-glutamate peptidase.
 
     0.841
tssC-2
Type VI secretion protein, EvpB/VC_A0108 family.
 
 
 0.835
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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