STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcAArginine deiminase. (605 aa)    
Predicted Functional Partners:
GLE_0442
Type VI secretion system Vgr family protein.
       0.773
GLE_1755
Peptidase, S41 family.
  
     0.707
GLE_2048
Peptidase, S41 family.
  
     0.701
GLE_3990
Lipoprotein.
   
   0.697
mutM-2
formamidopyrimidine-DNA glycosylase.
  
     0.664
GLE_1847
Hydrolase, alpha/beta fold family protein.
  
     0.640
GLE_2686
5'-nucleotidase.
  
     0.637
GLE_1517
Flavodoxin-like fold family protein.
  
     0.613
GLE_4103
Hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
  
  
  0.566
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
   0.562
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.