STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0443Type IV / VI secretion system protein, DotU family. (250 aa)    
Predicted Functional Partners:
tssK
Type VI secretion protein, VC_A0114 family.
  
 0.986
tssJ
Type VI secretion lipoprotein, VC_A0113 family.
  
 0.984
tssC
Type VI secretion protein, EvpB/VC_A0108 family.
 
  
 0.958
tssC-2
Type VI secretion protein, EvpB/VC_A0108 family.
 
  
 0.939
GLE_0442
Type VI secretion system Vgr family protein.
  
 0.928
tssB
Type VI secretion protein, VC_A0107 family.
 
  
 0.923
vasA
Type VI secretion protein, VC_A0110 family.
 
  
 0.893
tssE
Type VI secretion system lysozyme-related protein.
 
  
 0.870
tssB-2
Type VI secretion protein, VC_A0107 family.
 
  
 0.869
icmF
Type VI secretion protein IcmF.
 
 
 0.867
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.