Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
tssEType VI secretion system lysozyme-related protein. (162 aa)    
Predicted Functional Partners:
vasA
Type VI secretion protein, VC_A0110 family.
  
 0.994
tssG
Type VI secretion protein, VC_A0111 family.
  
 0.994
tssK
Type VI secretion protein, VC_A0114 family.
 
  
 0.914
tssJ
Type VI secretion lipoprotein, VC_A0113 family.
 
  
 0.904
tssB
Type VI secretion protein, VC_A0107 family.
 
  
 0.899
clpV
ClpV1 family type VI secretion ATPase; Belongs to the ClpA/ClpB family.
 
  
 0.895
tssC
Type VI secretion protein, EvpB/VC_A0108 family.
 
  
 0.890
tssA
Type VI secretion-associated protein, ImpA family.
 
  
 0.885
GLE_0443
Type IV / VI secretion system protein, DotU family.
 
  
 0.860
GLE_0455
Type VI secretion system Vgr family protein.
 
   
 0.832
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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