Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tssGType VI secretion protein, VC_A0111 family. (362 aa)    
Predicted Functional Partners:
tssE
Type VI secretion system lysozyme-related protein.
  
 0.994
vasA
Type VI secretion protein, VC_A0110 family.
  
 0.994
tssA
Type VI secretion-associated protein, ImpA family.
 
 
 0.975
tssA-2
Type VI secretion-associated protein, ImpA family.
 
 
 0.967
tssK
Type VI secretion protein, VC_A0114 family.
 
 
 0.962
tssK-2
Type VI secretion protein, VC_A0114 family.
 
 
 0.956
clpV
ClpV1 family type VI secretion ATPase; Belongs to the ClpA/ClpB family.
 
 
 0.925
tssB
Type VI secretion protein, VC_A0107 family.
 
 
 0.924
tssC
Type VI secretion protein, EvpB/VC_A0108 family.
 
 
 0.923
tssC-2
Type VI secretion protein, EvpB/VC_A0108 family.
 
 
 0.922
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.