Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GLE_0463Siderophore-interacting FAD-binding domain protein. (275 aa)    
Predicted Functional Partners:
GLE_2622
Isochorismatase.
 
  
 0.919
GLE_0462
Transcriptional regulator, PadR family.
   
 0.883
menF
Menaquinone-specific isochorismate synthase.
  
  
 0.585
GLE_0464
Transporter, major facilitator superfamily.
       0.532
GLE_2430
Hypothetical protein.
   
    0.515
GLE_2428
Metal cation transporter, zinc (Zn2+)-iron (Fe2+) permease (ZIP) family.
   
    0.464
GLE_1673
40-residue yvtn family beta-propeller repeat protein.
   
    0.438
GLE_4894
Amino acid adenylation domain protein.
  
  
 0.435
GLE_2621
Condensation domain protein.
  
    0.418
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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