Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
paaGenoyl-CoA hydratase. (405 aa)    
Predicted Functional Partners:
mmsB
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
 
 0.998
GLE_0576
acyl-coA dehydrogenase.
 
 0.960
crt
3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
0.909
mmsA
Methylmalonate-semialdehyde dehydrogenase (acylating).
 
  0.892
GLE_0632
Sensory box histidine kinase.
    
 0.882
mvaB
Hydroxymethylglutaryl-CoA lyase.
  
 
 0.865
GLE_1142
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 0.818
GLE_1143
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 0.818
queH
Hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
       0.800
GLE_1950
methylcrotonoyl-CoA carboxylase subunit alpha.
  
 0.768
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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