STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0600RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (190 aa)    
Predicted Functional Partners:
GLE_0601
Sigma factor regulatory protein, FecR/PupR family.
 
  0.878
GLE_5058
Sigma factor regulatory protein, FecR/PupR family.
 
 0.806
GLE_2547
Sigma factor regulatory protein, FecR/PupR family.
 
  0.793
GLE_0618
Sigma factor regulatory protein, FecR/PupR family.
  
  0.779
GLE_0732
Sigma factor regulatory protein, FecR/PupR family.
  
  0.773
GLE_1704
Anti sigma-E protein.
  
 
 0.703
sigX
RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.555
GLE_0602
TonB-dependent receptor.
 
    0.501
GLE_1068
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.442
GLE_0599
Transcriptional regulator, TetR family.
       0.432
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.