STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydBCytochrome d ubiquinol oxidase, subunit II. (377 aa)    
Predicted Functional Partners:
cyaA
Cytochrome d ubiquinol oxidase, subunit I.
 0.999
cyaA-2
Cytochrome d ubiquinol oxidase, subunit I.
 0.999
ybgT
Cyd operon protein YbgT.
 
 0.997
cydB-2
Cytochrome d ubiquinol oxidase, subunit II.
  
  
 
0.938
GLE_0638
Hypothetical protein.
       0.788
GLE_0642
Hypothetical protein.
  
    0.651
GLE_2171
Proton-translocating NADH-quinone oxidoreductase, chain M family protein.
     
 0.609
cyoD
Cytochrome o ubiquinol oxidase subunit IV.
     
 0.599
nuoH
NADH dehydrogenase, H subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
   
 
 0.565
nuoE
NADH-quinone oxidoreductase, E subunit family protein.
     
 0.564
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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