GLE_0711 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLE_0711

Hypothetical protein. (759 aa)

Predicted Functional Partners:

GLE_0029

0.810

GLE_1431

0.674

GLE_3751

0.674

GLE_0710

0.565

GLE_3671

0.484

GLE_0712

0.460

GLE_0155

0.455

GLE_0494

0.433

GLE_4504

0.433

ply

0.428

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_0029	GLE_0494	GLE_0029	GLE_0494	Tail length tape measure protein.	Ricin type lectin domain protein.	0.513
GLE_0029	GLE_0711	GLE_0029	GLE_0711	Tail length tape measure protein.	Hypothetical protein.	0.810
GLE_0029	GLE_0712	GLE_0029	GLE_0712	Tail length tape measure protein.	Hypothetical protein.	0.810
GLE_0029	GLE_3671	GLE_0029	GLE_3671	Tail length tape measure protein.	Hypothetical protein.	0.721
GLE_0029	GLE_4504	GLE_0029	GLE_4504	Tail length tape measure protein.	Hypothetical protein.	0.513
GLE_0029	ply	GLE_0029	GLE_0428	Tail length tape measure protein.	L-alanyl-D-glutamate peptidase.	0.490
GLE_0155	GLE_0711	GLE_0155	GLE_0711	Hypothetical protein.	Hypothetical protein.	0.455
GLE_0155	GLE_0712	GLE_0155	GLE_0712	Hypothetical protein.	Hypothetical protein.	0.455
GLE_0494	GLE_0029	GLE_0494	GLE_0029	Ricin type lectin domain protein.	Tail length tape measure protein.	0.513
GLE_0494	GLE_0711	GLE_0494	GLE_0711	Ricin type lectin domain protein.	Hypothetical protein.	0.433
GLE_0494	GLE_0712	GLE_0494	GLE_0712	Ricin type lectin domain protein.	Hypothetical protein.	0.433
GLE_0494	GLE_3671	GLE_0494	GLE_3671	Ricin type lectin domain protein.	Hypothetical protein.	0.617
GLE_0710	GLE_0711	GLE_0710	GLE_0711	Hypothetical protein.	Hypothetical protein.	0.565
GLE_0711	GLE_0029	GLE_0711	GLE_0029	Hypothetical protein.	Tail length tape measure protein.	0.810
GLE_0711	GLE_0155	GLE_0711	GLE_0155	Hypothetical protein.	Hypothetical protein.	0.455
GLE_0711	GLE_0494	GLE_0711	GLE_0494	Hypothetical protein.	Ricin type lectin domain protein.	0.433
GLE_0711	GLE_0710	GLE_0711	GLE_0710	Hypothetical protein.	Hypothetical protein.	0.565
GLE_0711	GLE_0712	GLE_0711	GLE_0712	Hypothetical protein.	Hypothetical protein.	0.460
GLE_0711	GLE_1431	GLE_0711	GLE_1431	Hypothetical protein.	Hypothetical protein.	0.674
GLE_0711	GLE_3671	GLE_0711	GLE_3671	Hypothetical protein.	Hypothetical protein.	0.484