Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0727Hypothetical protein. (260 aa)    
Predicted Functional Partners:
GLE_0726
Hypothetical protein.
 
    0.913
GLE_3956
Hypothetical protein.
  
     0.739
GLE_0725
Hypothetical protein.
 
    
0.701
GLE_1221
Hypothetical protein.
  
     0.684
GLE_2928
Hypothetical protein.
  
     0.673
GLE_5332
Tetratricopeptide repeat domain protein.
  
     0.638
pilI
Type IV pilus assembly protein.
  
     0.629
GLE_4143
Lipoprotein, LppC family.
  
     0.626
erpA
Iron-sulfur cluster assembly accessory protein; Required for insertion of 4Fe-4S clusters for at least IspG.
  
    0.580
hupA
DNA-binding protein; Belongs to the bacterial histone-like protein family.
  
     0.561
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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