Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GLE_0731RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (251 aa)    
Predicted Functional Partners:
GLE_0732
Sigma factor regulatory protein, FecR/PupR family.
 
   0.900
GLE_2547
Sigma factor regulatory protein, FecR/PupR family.
  
   0.779
GLE_5058
Sigma factor regulatory protein, FecR/PupR family.
 
 
 0.778
GLE_0618
Sigma factor regulatory protein, FecR/PupR family.
  
   0.765
GLE_0601
Sigma factor regulatory protein, FecR/PupR family.
  
   0.757
sigX
RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.674
GLE_1704
Anti sigma-E protein.
  
 
 0.652
GLE_1068
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.575
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.475
GLE_1599
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.452
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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