Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0796YceI like family; Belongs to the UPF0312 family. (192 aa)    
Predicted Functional Partners:
GLE_1140
Cytochrome B561.
 
  
 0.706
GLE_0797
Pirin domain protein; Belongs to the pirin family.
       0.684
GLE_0795
Nitroreductase family protein.
       0.653
GLE_0799
Glycosyl transferase, group 1 family protein.
 
     0.575
GLE_5205
Cytochrome B561.
 
  
 0.551
GLE_0798
Hypothetical protein.
       0.535
GLE_0800
O-Antigen Polymerase.
       0.511
GLE_0794
Hypothetical protein.
       0.476
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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