Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0838Transcriptional regulator, AraC family. (307 aa)    
Predicted Functional Partners:
GLE_3472
Transcriptional regulator, AraC family.
  
   0.743
GLE_0552
Transcriptional regulator, AraC family.
  
   0.701
GLE_4080
Transcriptional regulator, AraC family.
 
   0.686
GLE_2067
Transcriptional regulator, AraC family.
 
   0.675
rpoD
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.669
GLE_1769
Transcriptional regulator, AraC family.
  
   0.641
GLE_1200
Hypothetical protein.
  
     0.631
GLE_0968
Lipoprotein.
  
     0.592
GLE_0837
Transcriptional regulator.
 
     0.569
GLE_0235
Transcriptional regulator, AraC family.
  
   0.552
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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