STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_0879ABC transporter. (612 aa)    
Predicted Functional Partners:
GLE_5357
ABC transporter, ATP-binding protein.
 
  
 
0.690
GLE_0877
Hypothetical protein.
       0.566
GLE_0878
Hypothetical protein.
       0.566
GLE_3908
Histone deacetylase family.
  
  0.497
GLE_3673
ABC transporter, ATP-binding protein.
 
 
 
0.474
GLE_3494
ATPase, AAA family protein; Belongs to the AAA ATPase family.
 
 
  0.472
GLE_2901
Molybdopterin biosynthesis protein.
    
 
 0.448
GLE_4353
Abc transporter protein.
  
 
 
0.448
GLE_3571
ABC transporter, ATP-binding protein/transmembrane region.
  
 
 
0.440
GLE_0084
Hypothetical protein.
  
 
  0.434
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.