GLE_0887 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLE_0887

Methyltransferase 12. (357 aa)

Predicted Functional Partners:

GLE_0888

0.611

gcvP

0.559

purB-2

0.489

GLE_1919

0.489

coq7

0.489

GLE_3067

0.432

GLE_4392

0.432

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_0887	GLE_0888	GLE_0887	GLE_0888	Methyltransferase 12.	Lyase.	0.611
GLE_0887	GLE_1919	GLE_0887	GLE_1919	Methyltransferase 12.	Ubiquinone biosynthesis protein COQ7.	0.489
GLE_0887	GLE_3067	GLE_0887	GLE_3067	Methyltransferase 12.	Oxidoreductase.	0.432
GLE_0887	GLE_4392	GLE_0887	GLE_4392	Methyltransferase 12.	Oxidoreductase.	0.432
GLE_0887	coq7	GLE_0887	GLE_4263	Methyltransferase 12.	Ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.	0.489
GLE_0887	gcvP	GLE_0887	GLE_1547	Methyltransferase 12.	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.559
GLE_0887	purB-2	GLE_0887	GLE_0889	Methyltransferase 12.	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.489
GLE_0888	GLE_0887	GLE_0888	GLE_0887	Lyase.	Methyltransferase 12.	0.611
GLE_0888	purB-2	GLE_0888	GLE_0889	Lyase.	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.834
GLE_1919	GLE_0887	GLE_1919	GLE_0887	Ubiquinone biosynthesis protein COQ7.	Methyltransferase 12.	0.489
GLE_1919	coq7	GLE_1919	GLE_4263	Ubiquinone biosynthesis protein COQ7.	Ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.	0.729
GLE_3067	GLE_0887	GLE_3067	GLE_0887	Oxidoreductase.	Methyltransferase 12.	0.432
GLE_3067	GLE_4392	GLE_3067	GLE_4392	Oxidoreductase.	Oxidoreductase.	0.601
GLE_4392	GLE_0887	GLE_4392	GLE_0887	Oxidoreductase.	Methyltransferase 12.	0.432
GLE_4392	GLE_3067	GLE_4392	GLE_3067	Oxidoreductase.	Oxidoreductase.	0.601
coq7	GLE_0887	GLE_4263	GLE_0887	Ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.	Methyltransferase 12.	0.489
coq7	GLE_1919	GLE_4263	GLE_1919	Ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.	Ubiquinone biosynthesis protein COQ7.	0.729
gcvP	GLE_0887	GLE_1547	GLE_0887	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	Methyltransferase 12.	0.559
purB-2	GLE_0887	GLE_0889	GLE_0887	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	Methyltransferase 12.	0.489
purB-2	GLE_0888	GLE_0889	GLE_0888	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	Lyase.	0.834