Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GLE_0523 | GLE_0929 | GLE_0523 | GLE_0929 | OmpA/MotB family protein. | Hypothetical protein. | 0.581 |
GLE_0929 | GLE_0523 | GLE_0929 | GLE_0523 | Hypothetical protein. | OmpA/MotB family protein. | 0.581 |
GLE_0929 | GLE_2875 | GLE_0929 | GLE_2875 | Hypothetical protein. | Hypothetical protein. | 0.701 |
GLE_0929 | GLE_3554 | GLE_0929 | GLE_3554 | Hypothetical protein. | HNH endonuclease domain protein. | 0.552 |
GLE_0929 | GLE_4979 | GLE_0929 | GLE_4979 | Hypothetical protein. | Pteridine-dependent deoxygenase like protein. | 0.540 |
GLE_0929 | gvcR | GLE_0929 | GLE_3184 | Hypothetical protein. | Glycine cleavage system transcriptional repressor. | 0.672 |
GLE_0929 | mrcA | GLE_0929 | GLE_0931 | Hypothetical protein. | Penicillin-binding protein 1A. | 0.674 |
GLE_0929 | pfkA | GLE_0929 | GLE_0856 | Hypothetical protein. | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions. | 0.579 |
GLE_0929 | pnp | GLE_0929 | GLE_2180 | Hypothetical protein. | Polyribonucleotide nucleotidyltransferase, RNA binding domain; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.544 |
GLE_0929 | pyk | GLE_0929 | GLE_0983 | Hypothetical protein. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.538 |
GLE_0929 | ribB | GLE_0929 | GLE_4152 | Hypothetical protein. | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.676 |
GLE_2875 | GLE_0929 | GLE_2875 | GLE_0929 | Hypothetical protein. | Hypothetical protein. | 0.701 |
GLE_2875 | GLE_3554 | GLE_2875 | GLE_3554 | Hypothetical protein. | HNH endonuclease domain protein. | 0.429 |
GLE_2875 | GLE_4979 | GLE_2875 | GLE_4979 | Hypothetical protein. | Pteridine-dependent deoxygenase like protein. | 0.553 |
GLE_2875 | gvcR | GLE_2875 | GLE_3184 | Hypothetical protein. | Glycine cleavage system transcriptional repressor. | 0.730 |
GLE_3554 | GLE_0929 | GLE_3554 | GLE_0929 | HNH endonuclease domain protein. | Hypothetical protein. | 0.552 |
GLE_3554 | GLE_2875 | GLE_3554 | GLE_2875 | HNH endonuclease domain protein. | Hypothetical protein. | 0.429 |
GLE_4979 | GLE_0929 | GLE_4979 | GLE_0929 | Pteridine-dependent deoxygenase like protein. | Hypothetical protein. | 0.540 |
GLE_4979 | GLE_2875 | GLE_4979 | GLE_2875 | Pteridine-dependent deoxygenase like protein. | Hypothetical protein. | 0.553 |
gvcR | GLE_0929 | GLE_3184 | GLE_0929 | Glycine cleavage system transcriptional repressor. | Hypothetical protein. | 0.672 |
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