Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilNType IV pilus assembly protein. (282 aa)    
Predicted Functional Partners:
pilM
Type IV pilus assembly protein.
 
 0.999
pilO
Type IV assembly protein.
 
 
 0.999
pilQ
Type IV assembly protein.
 
 
 0.998
pilP
Type IV assembly protein.
 
  
 0.997
gspL
Fimbrial assembly protein.
  
 0.931
GLE_0354
Peptidoglycan-binding LysM.
  
 
   0.927
pilB
Type IV pilus assembly protein.
 
 
 
 0.860
pilC
Type IV pilus assembly protein.
 
 
 
 0.837
pilY1-2
Type IV pilus assembly protein.
 
  
 0.827
pilZ-2
Type IV pilus assembly protein PilZ.
  
   
 0.825
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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