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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilQType IV assembly protein. (700 aa)    
Predicted Functional Partners:
pilN
Type IV pilus assembly protein.
 
 
 0.998
pilP
Type IV assembly protein.
 
 
 0.997
pilM
Type IV pilus assembly protein.
 
 
 0.996
pilO
Type IV assembly protein.
 
 
 0.995
GLE_0354
Peptidoglycan-binding LysM.
 
 
 
 0.964
pilC
Type IV pilus assembly protein.
 
 
 
 0.922
pilB
Type IV pilus assembly protein.
 
 
 
 0.897
pilT
Type IV pilus assembly protein.
 
   
 0.841
GLE_5395
LysM/phospholipid-binding domain protein.
   
 
 0.787
pilA
Type IV pilus assembly protein; Belongs to the N-Me-Phe pilin family.
 
   
 0.785
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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