Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GLE_0961Outer membrane protein, OmpW family. (207 aa)    
Predicted Functional Partners:
GLE_2870
Coproporphyrinogen III oxidase family protein.
  
  
 0.618
GLE_4439
Oxygen-independent coproporphyrinogen III oxidase 1.
  
  
 0.618
ppk2
Polyphosphate kinase 2.
   
    0.568
GLE_0960
Endonuclease S1.
       0.501
gapA
Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.471
GLE_2404
Di-heme cytochrome c peroxidase family protein.
   
    0.464
GLE_1623
N-acetyltransferase family protein.
   
    0.459
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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