Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_1009Hypothetical protein. (408 aa)    
Predicted Functional Partners:
GLE_1010
PHP C- domain protein.
 
     0.700
GLE_1008
TonB-dependent receptor.
 
     0.679
GLE_2255
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
    
  0.603
GLE_4412
Peptidase, M28 family.
  
     0.577
GLE_5024
Membrane protein.
  
     0.513
GLE_5208
Peptidase, M61 (glycyl aminopeptidase) family.
  
     0.503
GLE_2797
Cytochrome P450 family protein.
   
  0.483
GLE_2436
Acetylesterase.
 
  
  0.480
GLE_1363
Type I phosphodiesterase / nucleotide pyrophosphatase family protein.
 
  
  0.467
plcN
Phospholipase C, phosphocholine-specific.
  
  
  0.466
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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