STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_1024Sensor histidine kinase. (445 aa)    
Predicted Functional Partners:
GLE_1023
Transcriptional regulatory protein, C terminal.
 
 0.976
rpaA
Transcriptional regulatory protein, C terminal - DNA-binding response regulator.
  
 0.873
GLE_4902
Response regulator receiver domain protein.
 
 0.872
GLE_4780
Transcriptional regulatory protein, C terminal - DNA-binding response regulator.
  
  0.807
GLE_5368
Sensor histidine kinase.
 
 0.804
phoP
DNA-binding response regulator.
  
 0.802
phoB
Phosphate regulon transcriptional regulatory protein PhoB.
  
  0.800
kdpE
KDP operon transcriptional regulatory protein KdpE.
  
 0.797
GLE_1628
DNA-binding response regulator.
  
  0.789
pilH-2
Type IV pilus assembly protein.
  
  0.787
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.