STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE_1049UPF0339 protein YegP. (111 aa)    
Predicted Functional Partners:
GLE_5395
LysM/phospholipid-binding domain protein.
 
   0.974
GLE_0354
Peptidoglycan-binding LysM.
  
   0.944
GLE_1239
Hypothetical protein.
  
  
 0.568
GLE_1050
Hypothetical protein.
       0.508
dusB
tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.
       0.497
GLE_1283
OsmC/Ohr family protein.
   
    0.483
otsA
Alpha,alpha-trehalose-phosphate synthase.
   
    0.470
GLE_5010
Transglycosylase-associated protein.
   
    0.420
GLE_0281
Hypothetical protein.
  
     0.405
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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