Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_1051PepSY-associated TM helix. (373 aa)    
Predicted Functional Partners:
GLE_1052
TonB-dependent receptor.
 
     0.866
GLE_1243
Flavodoxin/oxidoreductase NAD-binding domain.
 
   
  0.683
GLE_2552
TonB-dependent siderophore receptor.
 
    0.652
GLE_3678
TonB-dependent siderophore receptor.
  
     0.571
GLE_4586
TonB-dependent siderophore receptor.
 
    0.523
GLE_1353
TonB-dependent receptor.
  
     0.512
GLE_1053
Hypothetical protein.
       0.504
GLE_0601
Sigma factor regulatory protein, FecR/PupR family.
  
     0.484
fpvA
Ferripyoverdine receptor precursor.
 
    0.480
GLE_3067
Oxidoreductase.
     
  0.479
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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