Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GLE_1059Oxidoreductase, aldo/keto reductase family. (321 aa)    
Predicted Functional Partners:
GLE_1060
Hypothetical protein.
       0.773
hemP
Hypothetical protein.
       0.633
GLE_1058
Hypothetical protein.
       0.565
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
     
 0.514
GLE_3908
Histone deacetylase family.
   
  0.507
dkgB
2,5-diketo-d-gluconic acid reductase B.
  
 0.503
ugd
Udp-glucose 6-dehydrogenase.
   
 
  0.496
scrK
Fructokinase-1.
    
  0.495
GLE_3657
N-acetyl-D-glucosamine kinase (GlcNAc kinase).
     
  0.494
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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