Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GLE_1066Peptidase. (419 aa)    
Predicted Functional Partners:
GLE_1704
Anti sigma-E protein.
  
 
 0.749
GLE_4966
Lipoprotein.
  
     0.689
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
 0.622
GLE_1068
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.611
GLE_2837
Cysteine dioxygenase type I.
  
     0.574
GLE_1067
Hypothetical protein.
       0.558
GLE_2718
Lactoylglutathione lyase.
  
     0.532
GLE_1673
40-residue yvtn family beta-propeller repeat protein.
  
     0.487
GLE_0164
Sensory box histidine kinase.
  
  
 0.478
GLE_1986
Hypothetical protein.
  
     0.476
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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