GLE_1096 protein (Lysobacter enzymogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GLE_1096

acyl-CoA dehydrogenase, C-terminal domain. (827 aa)

Predicted Functional Partners:

fadJ

0.997

GLE_2914

0.986

GLE_5043

0.974

fadB

0.970

GLE_1971

0.964

fabV

0.904

GLE_3055

0.904

etfA

0.819

etfB

0.799

GLE_1954

0.728

Your Current Organism:

Lysobacter enzymogenes

NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLE_1096	GLE_1954	GLE_1096	GLE_1954	acyl-CoA dehydrogenase, C-terminal domain.	enoyl-CoA hydratase.	0.728
GLE_1096	GLE_1971	GLE_1096	GLE_1971	acyl-CoA dehydrogenase, C-terminal domain.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.964
GLE_1096	GLE_2914	GLE_1096	GLE_2914	acyl-CoA dehydrogenase, C-terminal domain.	3-ketoacyl-CoA thiolase A; Belongs to the thiolase-like superfamily. Thiolase family.	0.986
GLE_1096	GLE_3055	GLE_1096	GLE_3055	acyl-CoA dehydrogenase, C-terminal domain.	glutaryl-CoA dehydrogenase, (GCD).	0.904
GLE_1096	GLE_5043	GLE_1096	GLE_5043	acyl-CoA dehydrogenase, C-terminal domain.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.974
GLE_1096	etfA	GLE_1096	GLE_4234	acyl-CoA dehydrogenase, C-terminal domain.	Electron transfer flavoprotein subunit alpha.	0.819
GLE_1096	etfB	GLE_1096	GLE_4233	acyl-CoA dehydrogenase, C-terminal domain.	Electron transfer flavoprotein beta subunit.	0.799
GLE_1096	fabV	GLE_1096	GLE_0533	acyl-CoA dehydrogenase, C-terminal domain.	Short-chain alcohol dehydrogenase; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family.	0.904
GLE_1096	fadB	GLE_1096	GLE_2913	acyl-CoA dehydrogenase, C-terminal domain.	3-hydroxyacyl-CoA dehydrogenase.	0.970
GLE_1096	fadJ	GLE_1096	GLE_1702	acyl-CoA dehydrogenase, C-terminal domain.	Fatty acid oxidation complex subunit alpha.	0.997
GLE_1954	GLE_1096	GLE_1954	GLE_1096	enoyl-CoA hydratase.	acyl-CoA dehydrogenase, C-terminal domain.	0.728
GLE_1954	GLE_1971	GLE_1954	GLE_1971	enoyl-CoA hydratase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.807
GLE_1954	GLE_2914	GLE_1954	GLE_2914	enoyl-CoA hydratase.	3-ketoacyl-CoA thiolase A; Belongs to the thiolase-like superfamily. Thiolase family.	0.771
GLE_1954	GLE_3055	GLE_1954	GLE_3055	enoyl-CoA hydratase.	glutaryl-CoA dehydrogenase, (GCD).	0.783
GLE_1954	GLE_5043	GLE_1954	GLE_5043	enoyl-CoA hydratase.	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.772
GLE_1954	fadJ	GLE_1954	GLE_1702	enoyl-CoA hydratase.	Fatty acid oxidation complex subunit alpha.	0.629
GLE_1971	GLE_1096	GLE_1971	GLE_1096	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	acyl-CoA dehydrogenase, C-terminal domain.	0.964
GLE_1971	GLE_1954	GLE_1971	GLE_1954	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	enoyl-CoA hydratase.	0.807
GLE_1971	GLE_2914	GLE_1971	GLE_2914	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	3-ketoacyl-CoA thiolase A; Belongs to the thiolase-like superfamily. Thiolase family.	0.923
GLE_1971	GLE_3055	GLE_1971	GLE_3055	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	glutaryl-CoA dehydrogenase, (GCD).	0.808