Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilUType IV pilus assembly protein. (388 aa)    
Predicted Functional Partners:
pilC
Type IV pilus assembly protein.
  
   
 0.890
pilM
Type IV pilus assembly protein.
  
  
 0.872
pilD
Type IV prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.818
gspF
General secretion pathway protein F.
  
   
 0.801
pilT
Type IV pilus assembly protein.
 
  
0.791
pilN
Type IV pilus assembly protein.
  
  
 0.768
pilQ
Type IV assembly protein.
  
  
 0.761
pilO
Type IV assembly protein.
  
  
 0.754
pilP
Type IV assembly protein.
  
   
 0.733
pilE-2
Type IV pilus assembly protein.
  
   
 0.617
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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