Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
GLE_1248Hydroxylase. (228 aa)    
Predicted Functional Partners:
GLE_1249
TonB-dependent siderophore receptor.
 
  
 0.983
GLE_2552
TonB-dependent siderophore receptor.
 
  
 0.858
GLE_1247
PepSY-associated TM helix domain protein.
 
     0.831
GLE_2622
Isochorismatase.
   
    0.797
GLE_1246
Hypothetical protein.
 
     0.722
putA
Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.661
GLE_5026
TonB-dependent siderophore receptor.
 
    0.635
GLE_4586
TonB-dependent siderophore receptor.
 
    0.633
orf5
Hypothetical protein.
      
 0.579
GLE_1245
Hypothetical protein.
       0.474
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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