Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sufDFeS assembly protein SufD. (431 aa)    
Predicted Functional Partners:
sufC
FeS assembly ATPase SufC.
 
 0.999
sufB
FeS assembly protein SufB.
 
 
0.999
sufS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.997
sufE
Cysteine desulfuration protein SufE.
 
 
 0.854
sufT
FeS assembly SUF system protein SufT.
 
   
 0.811
iscA
Iron-sulfur cluster assembly protein IscA; Belongs to the HesB/IscA family.
  
 
 0.762
GLE_1261
FeS assembly SUF system regulator.
 
   
 0.700
bnzC
Benzene 1,2-dioxygenase, ferredoxin protein.
 
     0.630
GLE_1255
Acetyltransferase (GNAT) family.
       0.535
GLE_1259
Hypothetical protein.
       0.488
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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